Software in /cvmfs

Some scientific software suites are not available as Debian packages or the version packaged with Debian is too old or too new. Thus HPC provides CvmFs repositories to experiments and departments that need to deploy such software and distribute it to Linux users at GSI. CvmFs is only available for 64bit Debian Squeeze and newer. For software available on older Debian releases c.f. SoftwareInUsrLocal.

Software installed in CvmFs is either

  • not available as a debian package (or shall not be converted),
  • not managed by a member of the HPC Department
  • needs to be available in multiple versions in parallel

Using software distributed via cvmfs

For a list of available cvmfs repositories, maintainers and usage of cvmfs c.f. CvmFs. Some maintainers offer module files to use their software properly. For an overview about the environment-modules, the tool that lets you make us of them, see EnvironmentModules.

List of software available via cvmfs

The following list gives an overview about which software is available in which cvmfs repository. It is strongly recommended to learn about EnvironmentModules. If you need a certain software on a Debian release it is not available yet, contact the appropriate repository maintainer (c.f. CvmFs).

NameSorted ascending Command Version Description Module Files Available for DebianSqueeze? Available for DebianWheezy? Available for DebianJessie
aliroot Via ALICE modules various c.f. ALICE wiki /cvmfs/alice.gsi.de/modules DONE DONE ALERT!
ANTOINE via theory modules     /cvmfs/theory.gsi.de/modules DONE ALERT! ALERT!
blender /cvmfs/it.gsi.de/blender/2.78c/blender 2.78c Blender is a free and open source 3D creation suite. It supports the entirety of the 3D pipeline: modeling, rigging, animation, simulation, rendering, compositing and motion tracking.   ALERT! ALERT! DONE
boost Via IT modules 1.54   /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
bowtie /cvmfs/bio.gsi.de/bowtie-0.12.7/bowtie 0.12.7     DONE ALERT! ALERT!
Cad2Root . /cvmfs/fairroot.gsi.de/Cad2Root/myenv.sh       DONE ALERT! ALERT!
cernsoft Via IT modules 2006 geant3, paw, garfield, magboltz /cvmfs/it.gsi.de/modulefiles DONE DONE ALERT!
dabc . /cvmfs/csee.gsi.de/bin/dabclogin 2.6 Data Acquisition Backbone Core   DONE DONE ALERT!
fairroot . /cvmfs/fairroot.gsi.de/fairsoft/jul14p2/bin/thisroot.sh       DONE DONE ALERT!
fastjet Via ALICE modules 3.0.3 c.f. ALICE wiki /cvmfs/alice.gsi.de/modules DONE DONE ALERT!
fluka see /cvmfs/fairroot.gsi.de/fluka 2011     DONE ALERT! ALERT!
gamma . /cvmfs/gamma.gsi.de/env.sh   root, Go 4, geant 4 and gamma software   DONE ALERT! ALERT!
gcc Via IT modules various up to 8.1 Non Debian standard versions of gcc /cvmfs/it.gsi.de/modulefiles DONE DONE DONE
geant Via ALICE modules 3 and 4 c.f. ALICE wiki /cvmfs/alice.gsi.de/modules DONE DONE ALERT!
geneva Via IT modules 1.0.1 geneva libraries /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
git Via IT modules 1.8.5.5 Newer git version than the stock Squeeze one /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
go4 . /cvmfs/csee.gsi.de/bin/go4login 4.6 Go 4   DONE DONE ALERT!
gstore /cvmfs/it.gsi.de/gstore/gstore[64]   gstore   DONE DONE ALERT!
IDL /cvmfs/theory.gsi.de/bin/idl 8.0     DONE ALERT! ALERT!
IntelCompiler Via IT modules 12.1 Intel Compiler Suite /cvmfs/it.gsi.de/modulefiles DONE DONE ALERT!
IntelCompiler Via IT modules 15.0 Intel Compiler Suite /cvmfs/it.gsi.de/modulefiles ALERT! ALERT! DONE
IntelCompiler Via IT modules 16.0 Intel Compiler Suite /cvmfs/it.gsi.de/modulefiles DONE DONE DONE
IntelCompiler Via IT modules 17.0 Intel Compiler Suite /cvmfs/it.gsi.de/modulefiles ALERT! ALERT! DONE
IntelCompiler Via IT modules 17.4 Intel Compiler Suite /cvmfs/it.gsi.de/modulefiles ALERT! ALERT! DONE
llvm Via IT modules various up to 3.6.1 Non Debian standard versions of llvm /cvmfs/it.gsi.de/modulefiles DONE DONE DONE
Mathematica see MatheMatica 8, 9, 10     DONE DONE DONE
minuit Via IT modules 2-5.28 physics analysis tool for function minimization /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
open64 Via IT modules 4.5.1 Open64 Compiler /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
openmpi Via IT modules 1.6 Open MPI with Intel or PortlandCompiler /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
openmpi-gcc Via IT modules

various up

to 3.1

Open MPI with gcc 6, 7 and 8 /cvmfs/it.gsi.de/modulefiles ALERT! ALERT! DONE
openmpi-gcc via theory modules for gcc 1.8.1 Open MPI for GNU compiler collection 1.8.1 /cvmfs/theory.gsi.de/modulefiles ALERT! DONE ALERT!
openmpi-gnu via theory modules 1.6 Open MPI for GNU compilers /cvmfs/theory.gsi.de/modules DONE ALERT! ALERT!
openmpi-intel via theory modules 1.4.5 and 1.6 Open MPI for IntelCompiler /cvmfs/theory.gsi.de/modules DONE ALERT! ALERT!
oracle . /cvmfs/it.gsi.de/oracle/oraenv, then sqlplus is in your PATH 11.2.0.2 OracleClient   DONE DONE ALERT!
oracle . /cvmfs/it.gsi.de/oracle/oraenv, then sqlplus is in your PATH 12.1.2 OracleClient   ALERT! ALERT! DONE
pathscale Via IT modules 1.0.0 Pathscale Compiler /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
pgi Via IT modules 12.1 Portland Compiler /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
psql /cvmfs/it.gsi.de/pgsql/bin/psql 9.6.7 PostgreSQL Client   DONE DONE DONE
psql /cvmfs/it.gsi.de/pgsql/10/bin/psql 10.2 PostgreSQL 10 Client   DONE DONE DONE
psql /cvmfs/it.gsi.de/pgsql/beta/bin/psql 9.6.6 PostgreSQL BETA Client   DONE DONE DONE
psql /cvmfs/it.gsi.de/pgsql/next/bin/psql v10-DEV-SnapShot PostgreSQL DEV Client   DONE DONE DONE
pythia Via ALICE modules 8 c.f. ALICE wiki /cvmfs/alice.gsi.de/modules DONE DONE ALERT!
root Via ALICE modules 5.34 c.f. ALICE wiki /cvmfs/alice.gsi.de/modules DONE DONE ALERT!
root . /cvmfs/csee.gsi.de/bin/rootlogin 5.34 root   DONE DONE ALERT!
root module use /cvmfs/it.gsi.de/modulefiles/
module load root/version
5.34
6.6.6
root /cvmfs/it.gsi.de/modulefiles DONE DONE DONE
scalapack Via IT modules 2.0.2 libscalapack /cvmfs/it.gsi.de/modulefiles DONE ALERT! ALERT!
soap /cvmfs/bio.gsi.de/soap2.21release 2.21 SOAPaligner   DONE ALERT! ALERT!
tgif /cvmfs/it.gsi.de/tgif/bin/tgif 4.2.5 Tgif is an Xlib based interactive 2-D drawing tool   ALERT! ALERT! DONE
valgrind /cvmfs/it.gsi.de/valgrind/bin/valgrind 3.9.0 analysis tool   DONE ALERT! ALERT!

-- HpcGroup -- 2014 - 2017
Topic revision: r33 - 2018-06-06, DenisBertini